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| Scientists release rape transcriptome database |
Image source: BnTIR
Image source: BnTIR As one of the most important oil crops in our country, rapeseed is the largest in the world in terms of planting area all year round.
The industry integrates various functions such as ornamental, nectar, ecological, and economic crops
.
Rapeseed oil is China's traditional edible oil, accounting for more than 40% of the total domestic vegetable oil, and is considered to be one of the most beneficial edible oils for health
In the past ten years, researchers have identified hundreds of genetic loci that control important agronomic traits in rapeseed
.
However, people's understanding of the major genes and their molecular mechanisms at these sites is very limited
Recently, "Journal of Plant Biotechnology" published online research articles, providing transcriptome data of 91 tissue samples covering three stages of rapeseed seedling, flowering, and maturity, and built a rape transcription information resource based on this.
Database BnTIR (http://yanglab.
hzau.
edu.
cn/BnTIR)
.
The research work was jointly completed by Yang Qingyong, the bioinformatics team of Huazhong Agricultural University , and Guo Liang , the rape team
Bioinformatics team Yang Qingyong, Yang Qingyong,
In this study, the author established the BnTIR database based on high-quality transcriptome data
.
The database integrates functional modules such as gene expression information query, eFP visualization, gene co-expression network, genome browser, and provides tools such as gene ID conversion, sequence comparison, sequence extraction, transcription factor family, and heat map drawing, etc.
Related paper information: https://doi.
https://doi.
org/10.
1111/pbi.
13665
